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Table 5 SNPs in Y. pesti s strains, relative to CO92

From: Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing

 

92A-4261

90A-4021

97A-7970

La Paz

Chromosome

    

   SNPs, n

24

19

28

53

   Ambiguities, n

1

1

5

9

   Total calls, n

25

20

33

62

pCD1

    

   SNPs, n

0

0

1

0

   Ambiguities, n

0

0

0

0

   Total calls, n

0

0

1

0

pPCP1

    

   SNPs, n

0

0

0

0

   Ambiguities, n

0

0

0

1

   Total calls, n

0

0

0

1

pMT1

    

   SNPs, n

1

1

1

1

   Ambiguities, n

0

0

0

0

   Total calls, n

1

1

1

1

  1. SNP, single-nucleotide polymorphism.