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Table 1 B. anthracis SOLiD™ system sequencing statistics

From: Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing

  A0032 (China) A0324 (Slovakia) A0377 (Haiti) A2012 (Florida Ames)
Beads found, n 25,789,050 3,849,205 5,393,062 19,073,351
Uniquely placed beads (≤ 3 mismatches), n (%) 15,561,852 (60.34) 2,803,450 (72.83) 4,020,634 (74.55) 13,447,970 (70.51)
Bases not uniquely covered, n (%) 74,268 (1.35) 95,241 (1.73) 78,849 (1.43) 68,629 (1.25)
Chromosome median coveragea 93× 16× 23× 79×
pXO1 median coverage 165× 34× 66× 241×
pXO1 mean copy number, n 1.8 2.1 2.9 3.1
pXO2 median coverage 135× 26× 42× 124×
pXO2 mean copy number 1.5 1.6 1.8 1.6
  1. a2.0% of the reference genome is non-unique 35-mers.
  2. ×, times.
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