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Table 1 B. anthracis SOLiDâ„¢ system sequencing statistics

From: Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing

 

A0032 (China)

A0324 (Slovakia)

A0377 (Haiti)

A2012 (Florida Ames)

Beads found, n

25,789,050

3,849,205

5,393,062

19,073,351

Uniquely placed beads (≤ 3 mismatches), n (%)

15,561,852 (60.34)

2,803,450 (72.83)

4,020,634 (74.55)

13,447,970 (70.51)

Bases not uniquely covered, n (%)

74,268 (1.35)

95,241 (1.73)

78,849 (1.43)

68,629 (1.25)

Chromosome median coveragea

93×

16×

23×

79×

pXO1 median coverage

165×

34×

66×

241×

pXO1 mean copy number, n

1.8

2.1

2.9

3.1

pXO2 median coverage

135×

26×

42×

124×

pXO2 mean copy number

1.5

1.6

1.8

1.6

  1. a2.0% of the reference genome is non-unique 35-mers.
  2. ×, times.