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Table 2 Summary results of the number of identical, polymorphic and different STR loci among five samples after searching using pSTR with 10 bp flanking sequences used as a reliability test

From: pSTR Finder: a rapid method to discover polymorphic short tandem repeat markers from whole-genome sequences

Samples

AC_000155.1

AC_000155.1a

AC_000155.1b

AC_000155.1c

AC_000155.1d

AC_000155.1

 

10856 (3)

11137 (9)

10440 (4)

10793 (12)

AC_000155.1a

3026 (0)

 

8108 (12)

9395 (4)

8734 (13)

AC_000155.1b

2739 (0)

3026 (2739)

 

7692 (13)

8045 (21)

AC_000155.1c

3441 (0)

1460 (1045)

3441 (2739)

 

7348 (16)

AC_000155.1d

3080 (0)

2112 (2058)

3080 (2739)

3441 (3080)

 
  1. Figures in the upper quadrant indicate the number of identical STR loci with the total number of polymorphic STR loci in brackets. The figures in the lower quadrant indicate the number of different STR loci and the numbers in brackets indicate the number of different STR loci after switching the ‘source sample’ with the ‘target sample’