Skip to main content

Table 2 SNaPshot fingerprints of WSMV strains and field isolates using the IUB nucleotide code a

From: Method: a single nucleotide polymorphism genotyping method for Wheat streak mosaic virus

Sample Origin SNP Profile
HC-Pro CP
Sidney 81 Nebraska M C C A G C G A W R R Y G Y W
Type Kansas K Y Y A G M G A A C A T G C C
OSU Oklahoma B Y Y A G B G A A C A Y G Y W
Merredin 1 Australia K C C A G C G A W S R T G C W
Merredin 2 Australia K Y Y A G S G A A C A T G C W
Ginnindera Australia K Y Y A G V G A A C A T G T T
Billings Montana T C C A G C G A A A A Y R Y Y
Conrad1 Montana C C C A G C G A A A A C A T T
Conrad2 Montana T M T A G C G R A A M Y R Y Y
Conrad3 Montana T C T A A C G R A C A T G C C
Helena Montana C C C A G C G A A M A Y G Y T
HuntleyA Montana Y C C A G C G A A A A Y A Y Y
HuntleyB Montana C C C A G C G A A A A C A T T
Kalispell Montana C C C A G C G A A A A C A T T
Toole Montana T C C A G C G A A - A T G C C
OK-KF Oklahoma K C Y A G S G A A S R C G Y W
OK-CC Oklahoma Y C C A G C G A A A A C G T T
OK-Lab Oklahoma B C Y A G C G A A M A Y G B Y
OK-425 Oklahoma K C C A G C G W A V R H S B W
CO-17 Colorado K C C R G C G A A M A Y G Y H
NE-932 Nebraska K C S A G C G A A V R T G C H
KS-117 Kansas K C Y A G S G A A S R C G Y W
bEl Batan 3 Mexico A C C A C T C A C G A C G C C
bCzech Czech T A T G A G T G C T C C G T C
  1. aIUB nucleotide code: R = AG, Y = TC, K = TG, M = AC, S = GC, W = AT, B = CGT, D = AGT, H = ACT, V = ACG, N = AGCT [33]. bindicates in silico results based on the sequence obtained from GenBank. WSMV, Wheat streak mosaic virus.