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Table 2 SNaPshot fingerprints of WSMV strains and field isolates using the IUB nucleotide code a

From: Method: a single nucleotide polymorphism genotyping method for Wheat streak mosaic virus

Sample

Origin

SNP Profile

HC-Pro

CP

Sidney 81

Nebraska

M

C

C

A

G

C

G

A

W

R

R

Y

G

Y

W

Type

Kansas

K

Y

Y

A

G

M

G

A

A

C

A

T

G

C

C

OSU

Oklahoma

B

Y

Y

A

G

B

G

A

A

C

A

Y

G

Y

W

Merredin 1

Australia

K

C

C

A

G

C

G

A

W

S

R

T

G

C

W

Merredin 2

Australia

K

Y

Y

A

G

S

G

A

A

C

A

T

G

C

W

Ginnindera

Australia

K

Y

Y

A

G

V

G

A

A

C

A

T

G

T

T

Billings

Montana

T

C

C

A

G

C

G

A

A

A

A

Y

R

Y

Y

Conrad1

Montana

C

C

C

A

G

C

G

A

A

A

A

C

A

T

T

Conrad2

Montana

T

M

T

A

G

C

G

R

A

A

M

Y

R

Y

Y

Conrad3

Montana

T

C

T

A

A

C

G

R

A

C

A

T

G

C

C

Helena

Montana

C

C

C

A

G

C

G

A

A

M

A

Y

G

Y

T

HuntleyA

Montana

Y

C

C

A

G

C

G

A

A

A

A

Y

A

Y

Y

HuntleyB

Montana

C

C

C

A

G

C

G

A

A

A

A

C

A

T

T

Kalispell

Montana

C

C

C

A

G

C

G

A

A

A

A

C

A

T

T

Toole

Montana

T

C

C

A

G

C

G

A

A

-

A

T

G

C

C

OK-KF

Oklahoma

K

C

Y

A

G

S

G

A

A

S

R

C

G

Y

W

OK-CC

Oklahoma

Y

C

C

A

G

C

G

A

A

A

A

C

G

T

T

OK-Lab

Oklahoma

B

C

Y

A

G

C

G

A

A

M

A

Y

G

B

Y

OK-425

Oklahoma

K

C

C

A

G

C

G

W

A

V

R

H

S

B

W

CO-17

Colorado

K

C

C

R

G

C

G

A

A

M

A

Y

G

Y

H

NE-932

Nebraska

K

C

S

A

G

C

G

A

A

V

R

T

G

C

H

KS-117

Kansas

K

C

Y

A

G

S

G

A

A

S

R

C

G

Y

W

bEl Batan 3

Mexico

A

C

C

A

C

T

C

A

C

G

A

C

G

C

C

bCzech

Czech

T

A

T

G

A

G

T

G

C

T

C

C

G

T

C

  1. aIUB nucleotide code: R = AG, Y = TC, K = TG, M = AC, S = GC, W = AT, B = CGT, D = AGT, H = ACT, V = ACG, N = AGCT [33]. bindicates in silico results based on the sequence obtained from GenBank. WSMV, Wheat streak mosaic virus.