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Table 1 General information on the STR loci selected by Hares [2], including chromosomal location, loci in kits or panels, mutation rates, and match probabilities, based on a Caucasian population1-3

From: Developing criteria and data to determine best options for expanding the core CODIS loci

Locus

Panels/Kits

Location

Size, Mb

Mutation rate

MP7

 

13 Core loci

New FBI core loci4

European loci5

Identifiler

PowerPlex 16

China6

  

Paternal

Maternal

 

D1S1656

 

A

S

   

1q42

228.972

1.54 × 10-3

3.70 × 10-4

0.019

D2S441

 

A

S

   

2p14

68.214

1.54 × 10-3

3.70 × 10-4

0.095

D2S1338

 

A

D

√

  

2q35

218.705

1.36 × 10-3

2.49 × 10-4

0.028

D3S1358

√

A

S

√

√

√

3p21.31

45.543

1.68 × 10-3

2.55 × 10-4

0.076

FGA

√

A

S

√

√

√

4q28

155.866

3.71 × 10-3

4.93 × 10-4

0.038

D5S818

√

A

 

√

√

√

5q23.2

123.139

1.66 × 10-3

2.69 × 10-4

0.158

CSF1PO

√

A

 

√

√

√

5q33.1

149.436

1.98 × 10-3

3.19 × 10-4

0.118

D7S820

√

A

 

√

√

√

7q21.11

83.433

1.37 × 10-3

7.23 × 10-5

0.065

D8S1179

√

A

S

√

√

√

8q24.13

125.976

2.06 × 10-3

3.33 × 10-4

0.061

D10S1248

 

A

S

   

10q26.3

130.567

1.54 × 10-3

3.70 × 10-4

0.092

TH01

√

A

S

√

√

 

11p15.5

2.149

5.20 × 10-5

6.03 × 10-5

0.081

D12S391

 

A

S

   

12p13.2

12.215

1.54 × 10-3

3.70 × 10-4

0.02

VWA

√

A

S

√

√

√

12p13.31

5.963

3.25 × 10-3

4.68 × 10-4

0.063

D13S317

√

A

 

√

√

√

13q31.1

81.620

1.74 × 10-3

4.03 × 10-4

0.085

PentaE

 

A

  

√

 

15q26.2

95.175

2.60 × 10-4

2.53 × 10-4

0.02

D16S539

√

A

D

√

√

√

16q24.1

84.944

1.03 × 10-3

5.25 × 10-4

0.1

D18S51

√

A

S

√

√

√

18q21.33

59.100

2.23 × 10-3

7.93 × 10-4

0.029

D19S433

 

A

D

√

  

19q12

35.109

9.75 × 10-4

5.48 × 10-4

0.088

D21S11

√

A

S

√

√

√

21q21.1

19.476

1.75 × 10-3

1.18 × 10-3

0.046

DYS391

 

A

    

Yq11.21

14.103

1.70 × 10-3

-

0.455

TPOX

√

B

 

√

√

 

2p25.3

1.472

1.65 × 10-4

1.05 × 10-4

0.195

SE33

 

B

D

   

6q14

89.043

6.40 × 10-3

3.00 × 10-3

0.005

PentaD

 

B

  

√

 

21q22.3

43.880

2.59 × 10-4

2.53 × 10-4

0.049

D22S1045

 

B

S

   

22q12.3

35.779

1.54 × 10-3

3.70 × 10-4

0.134

Loci, n

13

20 + 4

12 + 4

15

15

11

     
  1. 1Amelogenin is not included.
  2. 2'√' means that the locus is in the particular panel.
  3. 3The table is sorted by chromosome and location, and sections A and B loci are separated.
  4. 4'New FBI core' refers to the panel described by Hares [2]. 'A' and 'B' denote the loci placed into sections A and B, respectively.
  5. 5'S' denotes the loci in European Standard Set (ESS); 'D' denotes additional loci to expand the European Standard Set. The European loci panel differs by one locus (SE33) from the NGM loci [7].
  6. 6Eleven STR loci common to five major commercial kits used in China: Identifiler, Sinofiler, PowerPlex16, DNAtyper15, and AGCU (17+1) [24].
  7. 7MP, match probability.