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Table 1 General information on the STR loci selected by Hares [2], including chromosomal location, loci in kits or panels, mutation rates, and match probabilities, based on a Caucasian population1-3

From: Developing criteria and data to determine best options for expanding the core CODIS loci

Locus Panels/Kits Location Size, Mb Mutation rate MP7
  13 Core loci New FBI core loci4 European loci5 Identifiler PowerPlex 16 China6    Paternal Maternal  
D1S1656   A S     1q42 228.972 1.54 × 10-3 3.70 × 10-4 0.019
D2S441   A S     2p14 68.214 1.54 × 10-3 3.70 × 10-4 0.095
D2S1338   A D    2q35 218.705 1.36 × 10-3 2.49 × 10-4 0.028
D3S1358 A S 3p21.31 45.543 1.68 × 10-3 2.55 × 10-4 0.076
FGA A S 4q28 155.866 3.71 × 10-3 4.93 × 10-4 0.038
D5S818 A   5q23.2 123.139 1.66 × 10-3 2.69 × 10-4 0.158
CSF1PO A   5q33.1 149.436 1.98 × 10-3 3.19 × 10-4 0.118
D7S820 A   7q21.11 83.433 1.37 × 10-3 7.23 × 10-5 0.065
D8S1179 A S 8q24.13 125.976 2.06 × 10-3 3.33 × 10-4 0.061
D10S1248   A S     10q26.3 130.567 1.54 × 10-3 3.70 × 10-4 0.092
TH01 A S   11p15.5 2.149 5.20 × 10-5 6.03 × 10-5 0.081
D12S391   A S     12p13.2 12.215 1.54 × 10-3 3.70 × 10-4 0.02
VWA A S 12p13.31 5.963 3.25 × 10-3 4.68 × 10-4 0.063
D13S317 A   13q31.1 81.620 1.74 × 10-3 4.03 × 10-4 0.085
PentaE   A     15q26.2 95.175 2.60 × 10-4 2.53 × 10-4 0.02
D16S539 A D 16q24.1 84.944 1.03 × 10-3 5.25 × 10-4 0.1
D18S51 A S 18q21.33 59.100 2.23 × 10-3 7.93 × 10-4 0.029
D19S433   A D    19q12 35.109 9.75 × 10-4 5.48 × 10-4 0.088
D21S11 A S 21q21.1 19.476 1.75 × 10-3 1.18 × 10-3 0.046
DYS391   A      Yq11.21 14.103 1.70 × 10-3 - 0.455
TPOX B    2p25.3 1.472 1.65 × 10-4 1.05 × 10-4 0.195
SE33   B D     6q14 89.043 6.40 × 10-3 3.00 × 10-3 0.005
PentaD   B     21q22.3 43.880 2.59 × 10-4 2.53 × 10-4 0.049
D22S1045   B S     22q12.3 35.779 1.54 × 10-3 3.70 × 10-4 0.134
Loci, n 13 20 + 4 12 + 4 15 15 11      
  1. 1Amelogenin is not included.
  2. 2'√' means that the locus is in the particular panel.
  3. 3The table is sorted by chromosome and location, and sections A and B loci are separated.
  4. 4'New FBI core' refers to the panel described by Hares [2]. 'A' and 'B' denote the loci placed into sections A and B, respectively.
  5. 5'S' denotes the loci in European Standard Set (ESS); 'D' denotes additional loci to expand the European Standard Set. The European loci panel differs by one locus (SE33) from the NGM loci [7].
  6. 6Eleven STR loci common to five major commercial kits used in China: Identifiler, Sinofiler, PowerPlex16, DNAtyper15, and AGCU (17+1) [24].
  7. 7MP, match probability.
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