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Table 4 Established haplogroup and geographic origin versus haplogroup and geographic origin as inferable by Multiplex 1-3, for 75 CEPH-HGDP individuals.

From: Multiplex genotyping system for efficient inference of matrilineal genetic ancestry with continental resolution

GenBank accession HGDP ID HGDP population/sampling region Full sequence-based haplogroup* Multiplex-inferred haplogroup Multiplex-inferred matrilineal origin
EU597551.1 HGDP00003 Brahui (Pakistan) R2 R*(xR0,R9,R11,B,JT,U) E Eurasia/S Asia/Oceania
EU597563.1 HGDP00005 Brahui (Pakistan) M5a2a M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597574.1 HGDP00007 Brahui (Pakistan) H2b H W Eurasia
EU597492.1 HGDP00163 Sindhi (Pakistan) H2a H W Eurasia
EU597504.1 HGDP00165 Sindhi (Pakistan) M30 M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597516.1 HGDP00167 Sindhi (Pakistan) M2a1a M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597528.1 HGDP00213 Pathan (Pakistan) K2a5 U8b [incl. K] W Eurasia
EU597540.1 HGDP00214 Pathan (Pakistan) U9b1 U*(xU6,U8b) W Eurasia/S Asia
EU597552.1 HGDP00216 Pathan (Pakistan) J1d J W Eurasia
EU597564.1 HGDP00277 Kalash (Pakistan) U4a1 U*(xU6,U8b) W Eurasia/S Asia
EU597575.1 HGDP00279 Kalash (Pakistan) U4a1 U*(xU6,U8b) W Eurasia/S Asia
EU597493.1 HGDP00281 Kalash (Pakistan) R0a R0a W Eurasia/Africa
EU597489.1 HGDP00458 Biaka_Pygmies (CAR) L1c1a2a1 L0*(xL0k,L0d1a,L0d3)/L1 Africa
EU597501.1 HGDP00459 Biaka_Pygmies (CAR) L1c1a1a1b1 L0*(xL0k,L0d1a,L0d3)/L1 Africa
EU597513.1 HGDP00460 Biaka_Pygmies (CAR) L1c1a1a1b L0*(xL0k,L0d1a,L0d3)/L1 Africa
EU597525.1 HGDP00463 Mbuti_Pygmies (DRC) L2a2b1 L2/L4/L6 Africa
EU597537.1 HGDP00467 Mbuti_Pygmies (DRC) L0a2b L0*(xL0k,L0d1a,L0d3)/L1 Africa
EU597549.1 HGDP00468 Mbuti_Pygmies (DRC) L2a2b1 L2/L4/L6 Africa
EU597495.1 HGDP00545 Papuan (New Guinea) Q1 M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597507.1 HGDP00546 Papuan (New Guinea) P1d1 R*(xR0,R9,R11,B,JT,U) E Eurasia/S Asia/Oceania
EU597519.1 HGDP00547 Papuan (New Guinea) Q3a1 M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597573.1 HGDP00608 Bedouin (Israel) I5a1 I W Eurasia
EU597491.1 HGDP00609 Bedouin (Israel) L2a1 L2/L4/L6 Africa
EU597503.1 HGDP00610 Bedouin (Israel) U7 U*(xU6,U8b) W Eurasia/S Asia
EU597515.1 HGDP00675 Palestinian H13a1 H W Eurasia
EU597527.1 HGDP00676 Palestinian U5a1a1 U*(xU6,U8b) W Eurasia/S Asia
EU597539.1 HGDP00677 Palestinian HV0c HV*(xHV0a,H) W Eurasia
EU597569.1 HGDP00709 Colombian B2e B2 Native America
EU597580.1 HGDP00710 Colombian B2 B2 Native America
EU597554.1 HGDP00714 Cambodian M51a1 M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597566.1 HGDP00715 Cambodian B5a1a B4*(xB4a1,B2)/B5 E Eurasia
EU597577.1 HGDP00716 Cambodian M17c M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597531.1 HGDP00788 Melanesian (Bougainville) B4a1a1a1 B4a1 E Eurasia/Oceania
EU597543.1 HGDP00789 Melanesian (Bougainville) Q1c M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597486.1 HGDP00792 Colombian A2 A2*(xA2a,A2b) Native America
EU597556.1 HGDP00807 Orcadian (Orkney) X2b X*(xX2a) W Eurasia/Africa
EU597568.1 HGDP00808 Orcadian (Orkney) H5b H W Eurasia
EU597579.1 HGDP00810 Orcadian (Orkney) H5b H W Eurasia
EU597555.1 HGDP00823 Melanesian (Bougainville) B4a1a1a B4a1 E Eurasia/Oceania
EU597518.1 HGDP00945 Yakut (Siberia) Z3a1 M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597530.1 HGDP00946 Yakut (Siberia) D5a2a2 D*(xD1,D3,D2a,D4h3a) E Eurasia
EU597542.1 HGDP00947 Yakut (Siberia) C5a1 C*(xC1,C4c) E Eurasia
EU597498.1 HGDP00998 Karitiana (Brazil) D1 D1 Native America
EU597510.1 HGDP01000 Karitiana (Brazil) D1e D1 Native America
EU597526.1 HGDP01028 Bantu_Herero (S-Africa) L3d3a L3*(xM,N) Africa
EU597514.1 HGDP01033 Bantu_Zulu (S-Africa) L0d1a1 L0k/L0d1a/L0d3 Africa
EU597502.1 HGDP01034 Bantu_Tswana (S-Africa) L0d1b1 L0*(xL0k,L0d1a,L0d3)/L1 Africa
EU597533.1 HGDP01037 Pima (Mexico) C1c1 C1*(xC1a) Native America
EU597545.1 HGDP01039 Pima (Mexico) C1b C1*(xC1a) Native America
EU597557.1 HGDP01040 Pima (Mexico) C1b C1*(xC1a) Native America
EU597508.1 HGDP01075 Sardinian (Italy) U5b3a1a U*(xU6,U8b) W Eurasia/S Asia
EU597520.1 HGDP01076 Sardinian (Italy) J2b1a J W Eurasia
EU597532.1 HGDP01077 Sardinian (Italy) H1 H W Eurasia
EU597544.1 HGDP01147 North_Italian U5a2b U*(xU6,U8b) W Eurasia/S Asia
EU597505.1 HGDP01224 Mongola (China) B4a1c4 B4a1 E Eurasia/Oceania
EU597517.1 HGDP01225 Mongola (China) C4a1 C*(xC1,C4c) E Eurasia
EU597529.1 HGDP01226 Mongola (China) A4a1a A*(xA2) E Eurasia
EU597538.1 HGDP01255 Mozabite (Algeria) H H W Eurasia
EU597550.1 HGDP01256 Mozabite (Algeria) V HV0a [incl. V] W Eurasia
EU597562.1 HGDP01257 Mozabite (Algeria) U6a1a U6 W Eurasia/Africa
EU597541.1 HGDP01327 She (China) M7c1b M*(xM1,C,D) E Eurasia/S Asia/Oceania
EU597553.1 HGDP01328 She (China) B4b1a2 B4*(xB4a1,B2)/B5 E Eurasia
EU597565.1 HGDP01329 She (China) F4a1 R9 [incl. F] E Eurasia
EU597576.1 HGDP01337 Naxi (China) A4c1 A*(xA2) E Eurasia
EU597494.1 HGDP01338 Naxi (China) A11b A*(xA2) E Eurasia
EU597506.1 HGDP01339 Naxi (China) B4a1 B4a1 E Eurasia/Oceania
EU597567.1 HGDP01377 French_Basque HV0 HV*(xHV0a,H) W Eurasia
EU597578.1 HGDP01378 French_Basque T1a1 T W Eurasia
EU597496.1 HGDP01379 French_Basque K1a4a1 U8b [incl. K] W Eurasia
EU597497.1 HGDP01402 Adygei (Russia_Caucasus) U1a1 U*(xU6,U8b) W Eurasia/S Asia
EU597509.1 HGDP01403 Adygei (Russia_Caucasus) H1c H W Eurasia
EU597521.1 HGDP01404 Adygei (Russia_Caucasus) H2a1 H W Eurasia
EU597561.1 HGDP01408 Bantu (Kenya) L2a1f L2/L4/L6 Africa
EU597572.1 HGDP01411 Bantu (Kenya) L1c2a1a L0*(xL0k,L0d1a,L0d3)/L1 Africa
EU597490.1 HGDP01412 Bantu (Kenya) L3b1a1 L3*(xM,N) Africa
  1. * According to Build 11 of the mtDNA tree available at http://www.phylotree.org [7].
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Investigative Genetics

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