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Table 4 Established haplogroup and geographic origin versus haplogroup and geographic origin as inferable by Multiplex 1-3, for 75 CEPH-HGDP individuals.

From: Multiplex genotyping system for efficient inference of matrilineal genetic ancestry with continental resolution

GenBank accession

HGDP ID

HGDP population/sampling region

Full sequence-based haplogroup*

Multiplex-inferred haplogroup

Multiplex-inferred matrilineal origin

EU597551.1

HGDP00003

Brahui (Pakistan)

R2

R*(xR0,R9,R11,B,JT,U)

E Eurasia/S Asia/Oceania

EU597563.1

HGDP00005

Brahui (Pakistan)

M5a2a

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597574.1

HGDP00007

Brahui (Pakistan)

H2b

H

W Eurasia

EU597492.1

HGDP00163

Sindhi (Pakistan)

H2a

H

W Eurasia

EU597504.1

HGDP00165

Sindhi (Pakistan)

M30

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597516.1

HGDP00167

Sindhi (Pakistan)

M2a1a

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597528.1

HGDP00213

Pathan (Pakistan)

K2a5

U8b [incl. K]

W Eurasia

EU597540.1

HGDP00214

Pathan (Pakistan)

U9b1

U*(xU6,U8b)

W Eurasia/S Asia

EU597552.1

HGDP00216

Pathan (Pakistan)

J1d

J

W Eurasia

EU597564.1

HGDP00277

Kalash (Pakistan)

U4a1

U*(xU6,U8b)

W Eurasia/S Asia

EU597575.1

HGDP00279

Kalash (Pakistan)

U4a1

U*(xU6,U8b)

W Eurasia/S Asia

EU597493.1

HGDP00281

Kalash (Pakistan)

R0a

R0a

W Eurasia/Africa

EU597489.1

HGDP00458

Biaka_Pygmies (CAR)

L1c1a2a1

L0*(xL0k,L0d1a,L0d3)/L1

Africa

EU597501.1

HGDP00459

Biaka_Pygmies (CAR)

L1c1a1a1b1

L0*(xL0k,L0d1a,L0d3)/L1

Africa

EU597513.1

HGDP00460

Biaka_Pygmies (CAR)

L1c1a1a1b

L0*(xL0k,L0d1a,L0d3)/L1

Africa

EU597525.1

HGDP00463

Mbuti_Pygmies (DRC)

L2a2b1

L2/L4/L6

Africa

EU597537.1

HGDP00467

Mbuti_Pygmies (DRC)

L0a2b

L0*(xL0k,L0d1a,L0d3)/L1

Africa

EU597549.1

HGDP00468

Mbuti_Pygmies (DRC)

L2a2b1

L2/L4/L6

Africa

EU597495.1

HGDP00545

Papuan (New Guinea)

Q1

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597507.1

HGDP00546

Papuan (New Guinea)

P1d1

R*(xR0,R9,R11,B,JT,U)

E Eurasia/S Asia/Oceania

EU597519.1

HGDP00547

Papuan (New Guinea)

Q3a1

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597573.1

HGDP00608

Bedouin (Israel)

I5a1

I

W Eurasia

EU597491.1

HGDP00609

Bedouin (Israel)

L2a1

L2/L4/L6

Africa

EU597503.1

HGDP00610

Bedouin (Israel)

U7

U*(xU6,U8b)

W Eurasia/S Asia

EU597515.1

HGDP00675

Palestinian

H13a1

H

W Eurasia

EU597527.1

HGDP00676

Palestinian

U5a1a1

U*(xU6,U8b)

W Eurasia/S Asia

EU597539.1

HGDP00677

Palestinian

HV0c

HV*(xHV0a,H)

W Eurasia

EU597569.1

HGDP00709

Colombian

B2e

B2

Native America

EU597580.1

HGDP00710

Colombian

B2

B2

Native America

EU597554.1

HGDP00714

Cambodian

M51a1

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597566.1

HGDP00715

Cambodian

B5a1a

B4*(xB4a1,B2)/B5

E Eurasia

EU597577.1

HGDP00716

Cambodian

M17c

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597531.1

HGDP00788

Melanesian (Bougainville)

B4a1a1a1

B4a1

E Eurasia/Oceania

EU597543.1

HGDP00789

Melanesian (Bougainville)

Q1c

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597486.1

HGDP00792

Colombian

A2

A2*(xA2a,A2b)

Native America

EU597556.1

HGDP00807

Orcadian (Orkney)

X2b

X*(xX2a)

W Eurasia/Africa

EU597568.1

HGDP00808

Orcadian (Orkney)

H5b

H

W Eurasia

EU597579.1

HGDP00810

Orcadian (Orkney)

H5b

H

W Eurasia

EU597555.1

HGDP00823

Melanesian (Bougainville)

B4a1a1a

B4a1

E Eurasia/Oceania

EU597518.1

HGDP00945

Yakut (Siberia)

Z3a1

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597530.1

HGDP00946

Yakut (Siberia)

D5a2a2

D*(xD1,D3,D2a,D4h3a)

E Eurasia

EU597542.1

HGDP00947

Yakut (Siberia)

C5a1

C*(xC1,C4c)

E Eurasia

EU597498.1

HGDP00998

Karitiana (Brazil)

D1

D1

Native America

EU597510.1

HGDP01000

Karitiana (Brazil)

D1e

D1

Native America

EU597526.1

HGDP01028

Bantu_Herero (S-Africa)

L3d3a

L3*(xM,N)

Africa

EU597514.1

HGDP01033

Bantu_Zulu (S-Africa)

L0d1a1

L0k/L0d1a/L0d3

Africa

EU597502.1

HGDP01034

Bantu_Tswana (S-Africa)

L0d1b1

L0*(xL0k,L0d1a,L0d3)/L1

Africa

EU597533.1

HGDP01037

Pima (Mexico)

C1c1

C1*(xC1a)

Native America

EU597545.1

HGDP01039

Pima (Mexico)

C1b

C1*(xC1a)

Native America

EU597557.1

HGDP01040

Pima (Mexico)

C1b

C1*(xC1a)

Native America

EU597508.1

HGDP01075

Sardinian (Italy)

U5b3a1a

U*(xU6,U8b)

W Eurasia/S Asia

EU597520.1

HGDP01076

Sardinian (Italy)

J2b1a

J

W Eurasia

EU597532.1

HGDP01077

Sardinian (Italy)

H1

H

W Eurasia

EU597544.1

HGDP01147

North_Italian

U5a2b

U*(xU6,U8b)

W Eurasia/S Asia

EU597505.1

HGDP01224

Mongola (China)

B4a1c4

B4a1

E Eurasia/Oceania

EU597517.1

HGDP01225

Mongola (China)

C4a1

C*(xC1,C4c)

E Eurasia

EU597529.1

HGDP01226

Mongola (China)

A4a1a

A*(xA2)

E Eurasia

EU597538.1

HGDP01255

Mozabite (Algeria)

H

H

W Eurasia

EU597550.1

HGDP01256

Mozabite (Algeria)

V

HV0a [incl. V]

W Eurasia

EU597562.1

HGDP01257

Mozabite (Algeria)

U6a1a

U6

W Eurasia/Africa

EU597541.1

HGDP01327

She (China)

M7c1b

M*(xM1,C,D)

E Eurasia/S Asia/Oceania

EU597553.1

HGDP01328

She (China)

B4b1a2

B4*(xB4a1,B2)/B5

E Eurasia

EU597565.1

HGDP01329

She (China)

F4a1

R9 [incl. F]

E Eurasia

EU597576.1

HGDP01337

Naxi (China)

A4c1

A*(xA2)

E Eurasia

EU597494.1

HGDP01338

Naxi (China)

A11b

A*(xA2)

E Eurasia

EU597506.1

HGDP01339

Naxi (China)

B4a1

B4a1

E Eurasia/Oceania

EU597567.1

HGDP01377

French_Basque

HV0

HV*(xHV0a,H)

W Eurasia

EU597578.1

HGDP01378

French_Basque

T1a1

T

W Eurasia

EU597496.1

HGDP01379

French_Basque

K1a4a1

U8b [incl. K]

W Eurasia

EU597497.1

HGDP01402

Adygei (Russia_Caucasus)

U1a1

U*(xU6,U8b)

W Eurasia/S Asia

EU597509.1

HGDP01403

Adygei (Russia_Caucasus)

H1c

H

W Eurasia

EU597521.1

HGDP01404

Adygei (Russia_Caucasus)

H2a1

H

W Eurasia

EU597561.1

HGDP01408

Bantu (Kenya)

L2a1f

L2/L4/L6

Africa

EU597572.1

HGDP01411

Bantu (Kenya)

L1c2a1a

L0*(xL0k,L0d1a,L0d3)/L1

Africa

EU597490.1

HGDP01412

Bantu (Kenya)

L3b1a1

L3*(xM,N)

Africa

  1. * According to Build 11 of the mtDNA tree available at http://www.phylotree.org [7].