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Table 4 Y. pestis SOLiD™ system sequencing statistics

From: Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing

  92A-4261 (CA) 90A-4021 (CA) 97A-7970 (CA) La Paz (Bolivia)
Beads found, n 34,339,098 25,716,321 36,469,495 28,150,279
Uniquely placed beads (≤ 3 mismatches), n (%) 22,951,932 (66.84) 17,593,054 (68.41) 23,353,330 (64.04) 19,273,600 (68.47)
Bases not uniquely covered, n (%) 242925 (5.03) 243881 (5.05) 243543 (5.04) 316674 (6.56)
Chromosome median coveragea 168× 129× 176× 139×
pCD1 median coverage 379× 292× 328× 141×
pCD1 mean copy number, n 2.3 2.3 1.9 1.0
pPCP1 median coverage 2,350× 1,283× 1,694× 2,339×
pPCP1 mean copy number 14.0 9.9 9.6 16.8
pMT1 median coverage 241× 185× 248× 119×
pMT1 mean copy number 1.4 1.4 1.4 0.9
  1. a6.7% of the reference genome is non-unique 35-mers.
  2. ×, times.