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Table 1 HVSI mutations and haplotypes observed in the Queixadinha and the presumed Botocudo samples

From: Recovering mitochondrial DNA lineages of extinct Amerindian nations in extant homopatric Brazilian populations

Haplotype

GenBank accession number

Number of samples

HVSIa nucleotide position

Haplogroup

   

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

 
   

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

6

 
   

0

1

1

1

1

1

1

1

1

1

1

2

2

2

2

2

2

2

2

2

3

3

3

3

3

3

 
   

5

1

1

1

2

2

5

6

7

7

8

1

1

2

2

6

7

8

9

9

1

2

2

3

5

6

 
   

1

1

3

7

6

9

3

6

2

8

9

3

7

3

4

0

8

7

5

8

1

5

7

5

6

2

 

CRS

  

A

C

A

T

T

G

G

A

T

T

T

G

T

C

T

C

C

C

C

T

T

T

C

A

T

T

 

Queixadinha samples (QUEIX)

                           

MG18

EU526929

1

.

.

.

.

.

.

.

.

.

C

C

.

C

.

.

.

.

.

.

.

.

.

.

.

.

.

B

MG22

EU526933

1

.

.

.

.

.

.

.

.

.

C

C

.

C

T

.

.

.

.

.

.

.

.

.

.

.

.

B

MG23

EU526934

1

.

T

.

.

.

.

.

.

.

C

C

.

C

.

.

.

.

.

.

.

.

.

.

.

.

.

B

MG24

EU526935

1

.

.

.

C

.

.

.

.

.

C

C

.

C

.

.

.

.

.

.

.

.

.

.

.

.

.

B

MG28

EU526939

1

.

.

.

.

.

.

.

.

.

.

.

.

.

T

.

.

.

.

.

C

.

C

T

.

.

C

C

MG30

EU526941

3

G

.

.

.

.

.

.

.

.

.

.

.

C

T

.

.

.

T

.

C

.

C

T

.

.

.

C

MG31c

EU526942

1

G

.

.

.

.

.

.

.

C

.

.

.

.

T

.

.

.

.

T

C

.

C

T

G

.

.

C

MG32

EU526943

2

.

.

.

.

C

.

.

.

.

.

.

.

.

T

.

.

.

.

.

C

.

C

T

.

.

.

C

MG33

EU526944

5

.

.

.

.

.

.

.

G

.

.

.

.

.

T

C

T

.

.

.

C

.

C

T

.

C

.

C

MG34

EU526945

1

.

.

C

.

.

.

.

.

.

.

.

.

.

T

.

.

.

.

T

C

C

C

.

.

.

.

C

MG36

EU526947

1

.

.

.

.

.

.

.

.

.

.

.

.

.

T

.

.

.

.

.

.

.

C

T

.

.

.

C

MG37

EU526948

1

.

.

.

.

.

.

.

.

.

.

.

.

.

T

.

.

.

.

.

.

.

C

.

.

.

C

D

MG39

EU526950

1

.

.

.

.

.

.

A

.

.

.

.

A

.

T

.

.

T

.

.

.

C

.

.

.

.

C

D

Total

 

20

                           

Botocudo samples

                           

Bot01

HM151388

3

.

.

.

.

.

.

.

.

.

.

.

.

.

T

.

.

.

.

.

C

.

C

T

.

.

.

C

Bot02

HM151391

1

.

.

.

.

.

A

.

.

.

.

.

.

.

T

.

.

.

.

.

C

.

C

T

.

.

.

C

Bot03

HM151392

4

G

.

.

.

.

.

.

.

.

.

.

.

.

T

.

.

.

.

.

C

.

C

T

.

.

.

C

Bot04c

HM151396

4

G

.

.

.

.

.

.

.

C

.

.

.

.

T

.

.

.

.

T

C

.

C

T

G

.

.

C

Bot05d

 

1

                          

B

Bot06d

 

1

                          

B

otal

 

14

                           
  1. aHVS = hypervariable segment.; bCRS = Cambridge Reference Sequence; cthese two sequences were identical; dthese two sequences will be the subject of a future publication.
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Investigative Genetics

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